As far as i can tell, the polarity of the magnet doesn't matter.
I'm sure hot glue would work fine. Just might be a bit of a pain in the ass to adjust if thats how you are planning on initially mounting them.
And I have my magnet oriented perpendicular to the shift linkage. It would probably still work if it the magnet was parallel to the linkage, you would just have to move the sensors a little further apart from each other.
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