Sounds like a fueling (carb) issue to me.
When having running problems that you think may be carb related, think in terms of throttle position (1/8, 1/4, 1/2, 3/4, WOT) to help narrow-down the carb circuit that could be causing the issue.
I would say the carbs may need to come off again and be gone through professionally - meaning total disassembly and ultrasonic cleaning. We have a member here that can do that for you.
Contact "ducatiman" if you want to go that route.
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