Possibility. I had bike where handlebars controls banged into tank horribly. I'd always have to make sure my thumbs were clear. However, that caused start push-button to bang against tank and get stuck in ON position Didn't notice that starter was running full-time.
Eventually, not sure how long, starter started burning out. I pried stuck button back out but it was too late. Starter-bearings was seized up and spun slowly with variable speed, giving WHUPP-WHUPP sound each time it pushed a cylinder to TDC.
So... test your start-button electronically and make sure it doesn't stick ON after you push it. That whining sound may be starter continuously running. Easy test is unplug connector coming from your start-button (if accessible). Otherwise, measure power coming out of both wires of start-button when bike's running.
Or... just disconnect power-cable from starter after bike's running and see if whining starter stops.
You can also remove starter and bench-test it with battery. It should spin quickly and smoothly with no screeching, grinding or whining noises.
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