As soon as I ride the bike I'll adjust the shifter height. I hope there is enough adjustment on the splined shaft so I can rotate the connecting point down a bit if I need to. this was the reason I was asking about a shorter shift link.
The brake pedal stays as a unit with the footpeg bracket, so not adjustment needs to be there. I should have taken a picture of it when to was off the bike so you could see all that stays connected to the bracket when removed, but I didn't. Sorry.